miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48467710|gb|CN986119.1|CN986119 AAGTATGCCGAGGGCTCCTGCCGATTCGGCACGAGGTTGGCTTCGAACCCCTGGAGAGGCTATTGAAGGCACTTACGTTG
ACTGGAAATGCCCCTTCGCTGGAAATGTCTCTATCCGTGGCCGTATTCTCTCGGGCGTGGTGACCAAGATGAACATGCAG
AGGACCATTGTCATCGGACGCGACTACCTGCATTACATCCGCAAGTACAACCGCTTTGAGAAAAGGCACGAGAACCTCTC
TGTCCTTCTGTCACCATGCTTCAGAGACGTCACAGTTGGACACATTGTGACTGTTGGAGAGTGCCGACCCCTCACCAAGA
CGGTGCGGTTCAACGTCCTCCAAGTGACCAAAGCCGCTGGAGCCAAGAAACAGTTTCAGAAGTTTTAGGCGTGACTATGA
TCAGGATGGCCTCTGACCAACTTGTTTCACTGTCCAATCAACAACATCTTGTTTAAAAAAGAGCAATACTCAATGCAAAC
ACGATTCCTTTGCCTGTTTCTAAATCATTGCATCGCCCCCAAACACGAAGAGCTGCAAGCATGGCAAACATGCCAACACC
ATGTGTGCAAGTTCTGCATGCACAGTATTATATGTTTGATACACTCAACACACACACACATACACACGCCAGCGCGCCTT
TGTCTTTTCATGCCATCTGCTAACATGTTTGTGTATGATTGTGTGTGAATTGCCACACGGGCTTGAATCTCTGTGTAATA
AATGGTAACTGTGCTTTGATGAAAAAAAAATACAGCTCATTAACGTCTGACTGTTTATAAACTGTCCGAAAATGAAGAAA
AAAAAAAAACTCGGGAGATATTCGCTGCTACCATAAGTCGTGGGAC




Most similar to sp|P62282|RS11_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           GN=Rps11 PE=1 SV=3
          Length = 158

 Score =  181 bits (459), Expect = 6e-45
 Identities = 87/102 (85%), Positives = 94/102 (92%)
 Frame = +2

Query: 44  RTPGEAIEGTYVDWKCPFAGNVSIRGRILSGVVTKMNMQRTIVIGRDYLHYIRKYNRFEK 223
           +TP EAIEGTY+D KCPF GNVSIRGRILSGVVTKM MQRTIVI RDYLHYIRKYNRFEK
Sbjct: 45  KTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEK 104

Query: 224 RHENLSVLLSPCFRDVTVGHIVTVGECRPLTKTVRFNVLQVT 349
           RH+N+SV LSPCFRDV +G IVTVGECRPL+KTVRFNVL+VT
Sbjct: 105 RHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVT 146